Shape Transform Plugins

_images/Close.png

Close plugin

_images/Close1.png
class morphonet.plugins.ShapeTransform.Close.Close

Bases: MorphoPlugin

This plugin performs the closing morphological operator on each individual selected object.

Parameters:

  • objects – The selected or labeled objects on MorphoNet

  • kernel_size – the amount of pixels closed

  • background_only – if False the new shape of the object can overwrite the other objects in the segmentation

_images/Convex.png

Convex plugin

_images/Convex1.png
class morphonet.plugins.ShapeTransform.Convex.Convex

Bases: MorphoPlugin

This plugin computes the convex voxel hull of each individual selected object.

Parameters:

  • objects – The selected or labeled objects on MorphoNet

  • background_only – if False the new shape of the object can overwrite the other objects in the segmentation

_images/Dilate.png

Dilate plugin

_images/Dilate1.png
class morphonet.plugins.ShapeTransform.Dilate.Dilate

Bases: MorphoPlugin

This plugin performs the dilation morphological operator on each individual selected object.

Parameters:

  • objects – The selected or labeled objects on MorphoNet

  • kernel_size – the amount of pixels dilated

  • background_only – if False the new shape of the object can overwrite the other objects in the segmentation

_images/Erode.png

Erode plugin

_images/Erode1.png
class morphonet.plugins.ShapeTransform.Erode.Erode

Bases: MorphoPlugin

This plugin performs the erosion morphological operator on each individual selected object.

Parameters:

  • objects – The selected or labeled objects on MorphoNet

  • kernel_size – the amount of pixels eroded

_images/Open.png

Open plugin

_images/Open1.png
class morphonet.plugins.ShapeTransform.Open.Open

Bases: MorphoPlugin

This plugin perform the opening morphological operator on each individual selected object.

Parameters:

  • objects – The selected or labeled objects on MorphoNet

  • kernel_size – the amount of pixels opened

_images/Deform.png

Deform plugin

_images/Deform1.png
class morphonet.plugins.ShapeTransform.Deform.Deform

Bases: MorphoPlugin

This plugin allows you to manually deform a selected object using mesh deformation. This plugin must be used with the mesh morphing menu and its various tools, and requires one selected object. The mesh morphing menu allows you to manually deform a selected object of your dataset by applying various transformations (move vertices, extrude, hollow, …) with the mouse pointer. Once you are satisfied with the deformation, this plugin computes the transformation(s) applied to the mesh to the segmented image in your dataset, and regenerates the mesh object using this segmented data.

Parameters:

objects – The selected object to apply deformation on MorphoNet

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