Seeds Creation Plugins

Distance On Mask Plugin

class morphonet.plugins.Seeds.Distance_On_Mask.Distance_On_Mask

Bases: MorphoPlugin

This plugin create new seeds from a h min (or max) algorithm on the rawdata image If objects are selected, the function will be applied only on their mask

If not, the function will be applied everywhere else there is no objects

Gaussian_Sigmaint, default :8

sigma parameters from the gaussian algorithm (from skimage) applied on the rawdata in otder to perform the h minimum or maximum algorithm

h_valueint, default :2

the h value of h_minima or h_maxumum algorithm (see https://scikit-image.org/docs/stable/api/skimage.morphology.html )

process(t, dataset, objects)

Long Axis Plugin

class morphonet.plugins.Seeds.Long_Axis.Long_Axis

Bases: MorphoPlugin

This plugin create new seeds from a h min (or max) algorithm on the rawdata image If objects are selected, the function will be applied only on their mask

If not, the function will be applied everywhere else there is no objects

Gaussian_Sigmaint, default :8

sigma parameters from the gaussian algorithm (from skimage) applied on the rawdata in otder to perform the h minimum or maximum algorithm

h_valueint, default :2

the h value of h_minima or h_maxumum algorithm (see https://scikit-image.org/docs/stable/api/skimage.morphology.html )

process(t, dataset, objects)

Minima On Background Plugin

class morphonet.plugins.Seeds.Minima_On_Background.Minima_On_Background

Bases: MorphoPlugin

This plugin create new seeds from a h min (or max) algorithm on the rawdata image If objects are selected, the function will be applied only on their mask

If not, the function will be applied everywhere else there is no objects

Gaussian_Sigmaint, default :8

sigma parameters from the gaussian algorithm (from skimage) applied on the rawdata in otder to perform the h minimum or maximum algorithm

h_valueint, default :2

the h value of h_minima or h_maxumum algorithm (see https://scikit-image.org/docs/stable/api/skimage.morphology.html )

process(t, dataset, objects)

Minima On Mask Plugin

class morphonet.plugins.Seeds.Minima_On_Mask.Minima_On_Mask

Bases: MorphoPlugin

This plugin create new seeds from a h min (or max) algorithm on the rawdata image If objects are selected, the function will be applied only on their mask

If not, the function will be applied everywhere else there is no objects

Gaussian_Sigmaint, default :8

sigma parameters from the gaussian algorithm (from skimage) applied on the rawdata in otder to perform the h minimum or maximum algorithm

h_valueint, default :2

the h value of h_minima or h_maxumum algorithm (see https://scikit-image.org/docs/stable/api/skimage.morphology.html )

process(t, dataset, objects)

On Erode Mask Plugin

class morphonet.plugins.Seeds.On_Erode_Mask.On_Erode_Mask

Bases: MorphoPlugin

This plugin create new seeds from a h min (or max) algorithm on the rawdata image If objects are selected, the function will be applied only on their mask

If not, the function will be applied everywhere else there is no objects

Gaussian_Sigmaint, default :8

sigma parameters from the gaussian algorithm (from skimage) applied on the rawdata in otder to perform the h minimum or maximum algorithm

h_valueint, default :2

the h value of h_minima or h_maxumum algorithm (see https://scikit-image.org/docs/stable/api/skimage.morphology.html )

process(t, dataset, objects)