Menu View

This menu serves to manage everyting that interacts with how you can visualize a dataset. it is organized in the following sections:

Dataset metadata

	Contextual, only appears for local datasets, and online datasets with intensity images. Shows dataset image dimensions, voxel size, applied downsample (for visualization only). Also, for each channel, if shows the path of the images used to create the dataset. The menu expands and collapses with clicking on the > buttons

Scatter effect

	Scatter objects from the gravity center. The magnitude is controlled by the slider. Can be applied to (using the dropdown): - All objects. - Currently selected objects. - Objects groups determined by labels.

3D Regions of interset (ROI)

	Crop the dataset along the X, Y and Z axes for make 3D regions of interest
Intensity	Toggle if intensity images should be cropped
Meshes	Toggle if intensity images should be cut. They will still be occulted if out of the cutting plane position
ROI on selection	automatically sets slider values to crop around selected objects
Reset	Reset slider positions

2D slicer

	Local dataset only: switches to 2D view mode. Displays segmented and intensity images on three 2D planes along each axis. Objects can still be interacted with, as in the "regular" mode. If there are intensity images on the dataset, the visualization is controlled through the Images menu.
Activate	Toggle on or off
Channel dropdown	select which segmentation channel to display
X, Y and Z toggles and sliders	Toggle plane visibility on/off and set plane position in image coordinates.
Toggle mesh visibility	Toggle on/off mesh visibility over the 2D planes. Use the 3D ROI menu to slice the meshes and compare them to the segmented image.
SEG opacity	Opacity of the segmentations on the planes.

Important notice: The 2D slicer mode takes time to load when changing time points, with the general size of the segmented images. Also, for visualization purposes, the segmentation is downsampled by the same factor as the intensity images if there are any. if the images are very slow to load, please change the downsample factor of your dataset.

Dataset Position, Orientation and scale (Transform)

	Manage rotation, position and scale for each time point or the whole dataset.
Reset	Reset view to default angle, position and scale.
Set at current time	Save the current transform for this time point.	Dataset owner only
Set global	Save current transform for all time points.	Dataset owner only.
Clear	Clear all saved transforms.	Dataset owner only.